Lyso-IP Reproducibility

Installation

⬇️ Click here to install in Cauldron (requires Cauldron to be running)

Repository: https://github.com/noatgnu/lysoip-reproducibility-plugin

Manual installation:

1. Open Cauldron
2. Go to Plugins → Install from Repository
3. Paste: https://github.com/noatgnu/lysoip-reproducibility-plugin
4. Click Install

ID: lysoip-reproducibility
Version: 1.0.0
Category: lysoip-qc
Author: CauldronGO Team

Description

Per-protein replicate consistency score within the IP and WCL groups for lyso-IP data

Workflow Diagram

flowchart TD
    Start([Start]) --> step1
    step1["Loading samples and abundance data"]
    step1 --> step2
    step2["Scoring replicate consistency per protein"]
    step2 --> step3
    step3["Reproducibility scoring complete"]
    step3 --> End([End])

Runtime

• Environments: python

• Entrypoint: lysoip_reproducibility.py

Inputs

Input Details

Protein Abundance (Long Format) (abundance_long_file)

abundance_long.tsv from the Lyso-IP Ingestion plugin

Samples (samples_file)

samples.tsv from the Lyso-IP Ingestion plugin

Outputs

Requirements

• Python Version: >=3.11

Example Data

This plugin includes example data for testing:

  abundance_long_file: examples/abundance_long.tsv
  samples_file: examples/samples.tsv

Load example data by clicking the Load Example button in the UI.

Usage

Via UI

1. Navigate to lysoip-qc → Lyso-IP Reproducibility
2. Fill in the required inputs
3. Click Run Analysis

Via Plugin System

const jobId = await pluginService.executePlugin('lysoip-reproducibility', {
  // Add parameters here
});